Introduction to RNA-seq data analysis - Extended Materials
Supplementary materials
These files contain some additional information and exercises not included during the taught course.
- Obtaining public data
- Raw read file format and QC
- Gene expression quantification
- Data exploration - extended
- A brief intro to the tidyverse
- A more extended tidyverse course can be found here: Introduction to R
- Further data exploration
- Annotation and Visualisation - extended
Supplementary lessons
Introductory R materials:
Additional resources - Places to get help
Bioconductor help
Biostars
SEQanswers
Acknowledgements
This course is based on the course RNAseq analysis in R prepared by Combine Australia and delivered on May 11/12th 2016 in Carlton. We are extremely grateful to the authors for making their materials available; Maria Doyle, Belinda Phipson, Matt Ritchie, Anna Trigos, Harriet Dashnow, Charity Law.
The materials have been rewritten/modified/corrected/updated by various contributors over the past 8 years including:
Abigail Edwards Ashley D Sawle Chandra Chilamakuri Dominique-Laurent Couturier Guillermo Parada González Jon Price Mark Dunning Mark Fernandes Oscar Rueda Sankari Nagarajan Stephane Ballereau Zeynep Kalender Atak
Apologies if we have missed anyone!