FastQCFastQC Report
Fri 26 Jun 2020
SRR9264353_S0_L001_I1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9264353_S0_L001_I1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences313990607
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGCGG8494447227.053188887271396No Hit
GCAGTTCT7531847123.987491765955916No Hit
TGCACAAA7334167923.357921340621505No Hit
AAGCAGTC6985102922.246216110534796No Hit
CTTTGCGA6577780.20948970616818485No Hit
TACACAAA5469700.17419947852134315No Hit
TTCACAAA4700590.1497047967425344No Hit
NTTTGCGG4417960.14070357206577203No Hit
AATCAGTC4224610.1345457445483393No Hit
CTTTACGG4079170.12991375885330225No Hit
ACAGTTCT4046450.12887168946426478No Hit
NCAGTTCT3888920.12385466040390183No Hit
GCAATTCT3787460.12062335355146468No Hit
NGCACAAA3787380.12062080570454771No Hit
NAGCAGTC3616980.11519389177141849No Hit
GCATTTCT3494360.11128867940944488No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)