FastQCFastQC Report
Fri 26 Jun 2020
SRR9264350_S0_L001_I1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9264350_S0_L001_I1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences324412280
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTGCGC10871023133.50990011845421No Hit
GAGGATCT7783181423.99163619823516No Hit
CTTATGAG7524487823.194213856516157No Hit
AGACCATA5403533416.65637749594436No Hit
TCCTTCGC6038780.18614523469950028No Hit
NCCTGCGC4114940.12684291729030728No Hit
AAACCATA3250690.10020243376730376No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)