FastQCFastQC Report
Fri 26 Jun 2020
SRR9264349_S0_L001_I1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9264349_S0_L001_I1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences325408071
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTACGC9268814028.483663516754014No Hit
CCCAGGAT9154849528.133443254393036No Hit
TAAGTATG6772550120.812483474019302No Hit
GTTCCTCA6575057020.205574433954343ABI Solid3 Adapter A (100% over 8bp)
CCCAAGAT4720890.14507599597921467No Hit
TAAGTATA4304000.13226469726990883No Hit
TAAATATG3713950.11413208002453018No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)