FastQCFastQC Report
Fri 26 Jun 2020
SRR9264347_S0_L001_I1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9264347_S0_L001_I1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences310871911
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGAGAT8810719128.34195946381273No Hit
ATGCCTTA8137946026.177810577424605No Hit
CGTATCGG6679897221.487619059928512No Hit
TAATGACC6570264121.134955804997126No Hit
ACCGAGAT5953610.19151328213760682Illumina Single End PCR Primer 1 (100% over 8bp)
NCCGAGAT4832280.15544279907617642No Hit
ATACCTTA4612390.148369467835259No Hit
NTGCCTTA4427020.14240656178164646No Hit
TAATTACC4332390.1393625427933886No Hit
ATTCCTTA4123290.13263629984247755No Hit
NGTATCGG3628590.11672299334885873No Hit
NAATGACC3588630.11543757647502607No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)