FastQCFastQC Report
Fri 26 Jun 2020
SRR9264346_S0_L001_I1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9264346_S0_L001_I1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences301155525
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCGTT8263787427.440264959442466No Hit
GCGGATAG7774206725.814590982516428No Hit
CATCTCCA6997398023.235163957227748No Hit
AGCAGAGC6340837621.05502663449392No Hit
GCGGATAA5441940.1807019811441281No Hit
NTATCGTT4034570.13396964907085798No Hit
NCGGATAG3817630.12676606215343383No Hit
NATCTCCA3398500.11284866847453653No Hit
NGCAGAGC3110420.10328284696088506No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)