FastQCFastQC Report
Fri 26 Jun 2020
SRR9264344_S0_L001_I1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9264344_S0_L001_I1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences330404706
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGCTG8790418926.605005135731936No Hit
TCCAATGC8575762925.955329159264455No Hit
GTAGCACA7307417222.11656513149059No Hit
CGTTTGAT7290766022.066168754872393No Hit
AAGNGCTG7240600.21914336777031257No Hit
TCCNATGC7105090.2150420339351946No Hit
GTANCACA6102390.18469440323286435No Hit
CGTNTGAT5981880.1810470580888155No Hit
GTAACACA5190570.1570973386801579No Hit
NAGCGCTG4130970.125027577543039No Hit
GTATCACA4090530.12380362403191679No Hit
NCCAATGC4031620.12202065911252487No Hit
AAGCACTG4031070.122004012860519No Hit
CGTTTTAT3744610.11333403949760933No Hit
NTAGCACA3455420.10458144019292509No Hit
NGTTTGAT3452220.1044845892721637No Hit
TCCAATAC3433030.10390378640672267No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)