FastQCFastQC Report
Tue 7 Jul 2020
SRR9264343_S0_L001_I1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR9264343_S0_L001_I1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences210987037
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAGACC5732207327.168528367930016No Hit
GGAGAGAG5413572525.658318051075334No Hit
TAGCTCTA4775685122.634969275387284No Hit
ATCTCTGT4454184521.11117613353658No Hit
NCTAGACC3951420.1872825959445082No Hit
NGAGAGAG3801930.1801973265305394No Hit
CCTATACC3427230.16243794162576916No Hit
NAGCTCTA3271870.15507445606717535No Hit
TATCTCTA3163790.1499518664741474No Hit
NTCTCTGT3055880.14483733424816994No Hit
CCTAAACC2372190.11243297378501979No Hit
ACTAGACC2195570.10406184338234958No Hit
CCTAGACA2184060.10351631223675604No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)